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In E. coli, dnaA protein binds to the __________________.

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origin of ...

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Why is DNA gyrase the target for several different antibiotics?

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DNA gyrase is the name given to Type II ...

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How are single-stranded regions of DNA maintained?

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Single-stranded bind...

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How is the processivity of DNA polymerase III accomplished?

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The structure of the enzyme complex allows the reaction processivity. The enzyme is a large complex that forms a ring around the DNA polymer. A specific subunit leaves enough space for the newly assembled DNA to be formed properly, and acts as a sliding DNA clamp.

Write the chemical reaction for the addition of the dNTP to a DNA strand at the 3` end.

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The answer should indicate cle...

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Use the following to answer questions Choose the correct answer from the list below. Not all of the answers will be used. -DNA can serve as a(n) _______________ to direct synthesis of the complementary strand of DNA or RNA.


A) helicases
B) Type I
C) Type II
D) G-rich strand
E) telomeres
F) topoisomerases
G) DNA polymerase
H) A-DNA
I) trombone-slide model
J) template
K) Holliday
L) Okazaki

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Use the following to answer questions Choose the correct answer from the list below. Not all of the answers will be used. -The type of topoisomerase that does not require ATP is _______________.


A) helicases
B) Type I
C) Type II
D) G-rich strand
E) telomeres
F) topoisomerases
G) DNA polymerase
H) A-DNA
I) trombone-slide model
J) template
K) Holliday
L) Okazaki

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Elongation of the DNA strand proceeds in the __________________ direction.

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5` → 3`

DNA clamps:


A) are composed of β2 subunits.
B) form a ring around the front of the fork of DNA.
C) allow the polymerase to move along the DNA molecule without falling off.
D) All of the above.
E) None of the above.

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D

Use the following to answer questions Choose the correct answer from the list below. Not all of the answers will be used. -The strands of DNA must be relaxed or unwound for replication by _______________.


A) helicases
B) Type I
C) Type II
D) G-rich strand
E) telomeres
F) topoisomerases
G) DNA polymerase
H) A-DNA
I) trombone-slide model
J) template
K) Holliday
L) Okazaki

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Type ________________ topoisomerase introduces negative supercoils in DNA, while type ________________ topoisomerase relaxes supercoil structures.

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The dimeric β2 subunit of DNA polymerase III acts as a(n) __________________.

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During DNA replication, the RNA primer pieces are removed by __________________.

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Why are enzymes, other than DNA polymerase, required for replication?

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DNA is an extremely stable molecule with...

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What function does helicase perform during replication?


A) It stabilizes the negative charge of the transition state.
B) It utilizes ATP to power strand separation.
C) It adds negative supercoils to DNA.
D) A and C.
E) None of the above.

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Proofreading by DNA polymerase increases accuracy by a factor of _________________ times.

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The term processivity:


A) indicates the error rate for a polymerase.
B) is the deletion of one or more bases in the DNA.
C) is specifically the speed of replication.
D) is the ability to catalyze many reactions without releasing substrate.
E) A, B, and C.

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The free end of the eukaryotic chromosome is thought to form a unique DNA structure that allows for complete replication. This structure involves a G-rich repeating sequence and forms a:


A) replication fork.
B) large duplex loop.
C) supercoiled loop.
D) displacement loop
E) None of the above.

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What is true about E. coli DNA polymerases?


A) There are five structural classes.
B) All have finger and thumb domains that wrap around the DNA.
C) All catalyze the same reaction, which requires metal cofactors.
D) B and C.
E) A, B, and C.

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Use the following to answer questions Choose the correct answer from the list below. Not all of the answers will be used. -The _______________ describes the lengthening of the loop formed by the lagging strand during replication.


A) helicases
B) Type I
C) Type II
D) G-rich strand
E) telomeres
F) topoisomerases
G) DNA polymerase
H) A-DNA
I) trombone-slide model
J) template
K) Holliday
L) Okazaki

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